TF_ChIP-seq_ENCSR864WKA
TF_ChIP-seq ENCSR864WKA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB34" and target="ZBTB34"]
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| Id: | TF_ChIP-seq/ENCSR864WKA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR864WKA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB34" and target="ZBTB34"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB34 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN783UHC|/analyses/ENCAN783UHC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF853HNX|/files/ENCFF853HNX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF853HNX|/files/ENCFF853HNX/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF420AQN|/files/ENCFF420AQN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF420AQN|/files/ENCFF420AQN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR864WKA | float |
TF_ChIP-seq_ENCSR864WKA |
TF_ChIP-seq ENCSR864WKA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB34" and target="ZBTB34"]
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[10.8, 520] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF685UPN.bed.gz | 253.05 KB | 28efc29b25a724a4318a3c4c7143d912 |
| ENCFF685UPN.bed.gz.dvc | 100.0 B | 791f1fb48394141553da163040c5303f |
| ENCFF685UPN.tabix.bed.gz | 190.95 KB | 3c0f1d36b8233f0e3bbf0f806c1c8abc |
| ENCFF685UPN.tabix.bed.gz.dvc | 106.0 B | c660b90858fe1a6a20e61acc8e7ac6b6 |
| ENCFF685UPN.tabix.bed.gz.tbi | 87.52 KB | 2fe87b7865b3f1a5f11341d7dbd0de4e |
| ENCFF685UPN.tabix.bed.gz.tbi.dvc | 109.0 B | 7e60b8ec526cc4046feb49012f10f14d |
| genomic_resource.yaml | 4.24 KB | 34fbc66443392310a5791e8e2fea699c |
| genomic_resource_original.yaml | 4.07 KB | 9077ab11d3383e320a9ce56945a25a4c |
| statistics/ |