TF_ChIP-seq_ENCSR864KNH
TF_ChIP-seq ENCSR864KNH [biosample_summary="Homo sapiens MCF-7" and target="YBX1"]
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| Id: | TF_ChIP-seq/ENCSR864KNH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR864KNH [biosamplesummary="Homo sapiens MCF-7" and target="YBX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN057VVZ|/analyses/ENCAN057VVZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF247VVK|/files/ENCFF247VVK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF817CLT|/files/ENCFF817CLT/}, {ENCFF247VVK|/files/ENCFF247VVK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.70 and a self consistency ratio of 2.79. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF771SAU|/files/ENCFF771SAU/}, {ENCFF817VMI|/files/ENCFF817VMI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.70 and a self consistency ratio of 2.79. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR864KNH | float |
TF_ChIP-seq_ENCSR864KNH |
TF_ChIP-seq ENCSR864KNH [biosample_summary="Homo sapiens MCF-7" and target="YBX1"]
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[18.2, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF247VVK.bed.gz | 64.64 KB | 6670aee2b3c64dbb21c5188f91519a24 |
| ENCFF247VVK.bed.gz.dvc | 99.0 B | 05a529760c892099ebe8d792f53b3a84 |
| ENCFF247VVK.tabix.bed.gz | 44.05 KB | 8e9b1d7dd3f2496bc2268c837a965cdf |
| ENCFF247VVK.tabix.bed.gz.dvc | 105.0 B | 40ba47044af194bc2e6ca00be94bf1ba |
| ENCFF247VVK.tabix.bed.gz.tbi | 29.36 KB | 8e22710f5ec3361379a424acd3ba4f86 |
| ENCFF247VVK.tabix.bed.gz.tbi.dvc | 109.0 B | 2c3140a099d46f4106fd09d0975b6435 |
| genomic_resource.yaml | 2.66 KB | cbeedd4dbc5cf1147f04fada3930ab72 |
| genomic_resource_original.yaml | 2.57 KB | 4a3a93a3a24aa3ce40b7d7c576a6f5a3 |
| statistics/ |