TF_ChIP-seq_ENCSR862PNL
TF_ChIP-seq ENCSR862PNL [biosample_summary="Homo sapiens HEK293T" and target="L3MBTL2"]
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| Id: | TF_ChIP-seq/ENCSR862PNL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR862PNL [biosamplesummary="Homo sapiens HEK293T" and target="L3MBTL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN351HWO|/analyses/ENCAN351HWO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN351HWO|/analyses/ENCAN351HWO/} has in progress subobject document {9514ba8e-f839-4502-a9c9-6c04f4fb6757|/documents/9514ba8e-f839-4502-a9c9-6c04f4fb6757/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF173AGJ|/files/ENCFF173AGJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF173AGJ|/files/ENCFF173AGJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.26. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF050KPJ|/files/ENCFF050KPJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF050KPJ|/files/ENCFF050KPJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR862PNL | float |
TF_ChIP-seq_ENCSR862PNL |
TF_ChIP-seq ENCSR862PNL [biosample_summary="Homo sapiens HEK293T" and target="L3MBTL2"]
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[16.8, 8.42e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF787KDZ.bed.gz | 479.7 KB | a949124846fb6c48b109df0b8bd54c66 |
| ENCFF787KDZ.bed.gz.dvc | 100.0 B | c8c4df966c304a0566772e0ece19fce2 |
| ENCFF787KDZ.tabix.bed.gz | 349.11 KB | 87dbd6a3022062227d93688cc25fba7e |
| ENCFF787KDZ.tabix.bed.gz.dvc | 106.0 B | c50d10997f821f387c156047b8732a8b |
| ENCFF787KDZ.tabix.bed.gz.tbi | 143.33 KB | d73df8fcdaf3b94e0b52472f65229f04 |
| ENCFF787KDZ.tabix.bed.gz.tbi.dvc | 110.0 B | a8366086808e9f46767df3b3559db57c |
| genomic_resource.yaml | 4.21 KB | 555a708d35c4dd6038bce878b1128339 |
| genomic_resource_original.yaml | 4.11 KB | 1e5ec08bbd9c91e16978a259e0885581 |
| statistics/ |