TF_ChIP-seq_ENCSR862LJQ
TF_ChIP-seq ENCSR862LJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296" and target="ZNF296"]
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| Id: | TF_ChIP-seq/ENCSR862LJQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR862LJQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296" and target="ZNF296"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN273WUO|/analyses/ENCAN273WUO/} has in progress subobject document {c6076c84-7a27-441f-aebf-d89a2405a420|/documents/c6076c84-7a27-441f-aebf-d89a2405a420/} audit_internal_action: Released analysis {ENCAN273WUO|/analyses/ENCAN273WUO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF191FAX|/files/ENCFF191FAX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF191FAX|/files/ENCFF191FAX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF823KVI|/files/ENCFF823KVI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF823KVI|/files/ENCFF823KVI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR862LJQ | float |
TF_ChIP-seq_ENCSR862LJQ |
TF_ChIP-seq ENCSR862LJQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF296" and target="ZNF296"]
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[11.6, 546] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF959TJF.bed.gz | 120.62 KB | 92358656fbc411d1525b8fa78f85aaa8 |
| ENCFF959TJF.bed.gz.dvc | 100.0 B | e784d56da32033691f205c8d211fb617 |
| ENCFF959TJF.tabix.bed.gz | 86.07 KB | fe9c25af46b9a8d2867b9b4e23ce28fc |
| ENCFF959TJF.tabix.bed.gz.dvc | 105.0 B | 23c9525c1d2084e953f7caf903debc8c |
| ENCFF959TJF.tabix.bed.gz.tbi | 47.67 KB | b44c99e24b554edf640ccc6e0e166e13 |
| ENCFF959TJF.tabix.bed.gz.tbi.dvc | 109.0 B | ad213c988183698f55c6d6c5714797ab |
| genomic_resource.yaml | 4.46 KB | 750765e63558e918ac86eec068cf57e0 |
| genomic_resource_original.yaml | 4.3 KB | 95816b90f2cdd91624fac023c2e16427 |
| statistics/ |