TF_ChIP-seq_ENCSR861UWB
TF_ChIP-seq ENCSR861UWB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB6" and target="HOXB6"]
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| Id: | TF_ChIP-seq/ENCSR861UWB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR861UWB [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB6" and target="HOXB6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HOXB6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN961UMZ|/analyses/ENCAN961UMZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF304NUI|/files/ENCFF304NUI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF304NUI|/files/ENCFF304NUI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF756FUC|/files/ENCFF756FUC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF756FUC|/files/ENCFF756FUC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.93. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF285MHB|/files/ENCFF285MHB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.94 and a self consistency ratio of 2.18. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF969RPX|/files/ENCFF969RPX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.94 and a self consistency ratio of 2.18. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR861UWB | float |
TF_ChIP-seq_ENCSR861UWB |
TF_ChIP-seq ENCSR861UWB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB6" and target="HOXB6"]
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[18.1, 534] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF285MHB.bed.gz | 27.43 KB | 6b5e0478a247f48dc0ae2447d75466b1 |
| ENCFF285MHB.bed.gz.dvc | 99.0 B | e9e33f211dbbbc649a05fb95b30c7144 |
| ENCFF285MHB.tabix.bed.gz | 17.33 KB | 1aa2a8e7e181236bf909da5c93602e23 |
| ENCFF285MHB.tabix.bed.gz.dvc | 105.0 B | 220a46f0647831a3cdae1338bfc2ac17 |
| ENCFF285MHB.tabix.bed.gz.tbi | 16.13 KB | 84d1f9e62400dc6933d072fdca457028 |
| ENCFF285MHB.tabix.bed.gz.tbi.dvc | 109.0 B | cc3704b50bd94aa4efe3e2355c6451c8 |
| genomic_resource.yaml | 5.27 KB | 9914773122dd8d63b120c40429b4b3b3 |
| genomic_resource_original.yaml | 5.11 KB | 1df0a94cf43148d0ceeda89951a054d5 |
| statistics/ |