TF_ChIP-seq_ENCSR860XVO
TF_ChIP-seq ENCSR860XVO [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331" and target="ZNF331"]
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| Id: | TF_ChIP-seq/ENCSR860XVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR860XVO [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331" and target="ZNF331"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN301DZJ|/analyses/ENCAN301DZJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN301DZJ|/analyses/ENCAN301DZJ/} has in progress subobject document {d3962127-b664-492b-b9f9-ed2e4f6dcdcc|/documents/d3962127-b664-492b-b9f9-ed2e4f6dcdcc/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF074PWQ|/files/ENCFF074PWQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF074PWQ|/files/ENCFF074PWQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF219FCR|/files/ENCFF219FCR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF219FCR|/files/ENCFF219FCR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.53. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR860XVO | float |
TF_ChIP-seq_ENCSR860XVO |
TF_ChIP-seq ENCSR860XVO [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF331" and target="ZNF331"]
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[14.1, 694] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF611WRQ.bed.gz | 43.41 KB | f76dfdd3fd8b57061214e0a685e00825 |
| ENCFF611WRQ.bed.gz.dvc | 99.0 B | 2e1663e33c5e6f7622eb4c94b61712bc |
| ENCFF611WRQ.tabix.bed.gz | 28.56 KB | eee0df18673d1931393d4eda26b32b3c |
| ENCFF611WRQ.tabix.bed.gz.dvc | 105.0 B | 9a5f0b64b60567f79961ec7805caf842 |
| ENCFF611WRQ.tabix.bed.gz.tbi | 20.21 KB | b78e7f3f81c43789e08294c0fbe684c1 |
| ENCFF611WRQ.tabix.bed.gz.tbi.dvc | 109.0 B | 51815ba399d4cb80405801c1e8b964cd |
| genomic_resource.yaml | 4.45 KB | f7a41b3ebd51e5888664dc71f838b691 |
| genomic_resource_original.yaml | 4.29 KB | 7b5b13a9946540d28268eed5dbd38e50 |
| statistics/ |