TF_ChIP-seq_ENCSR860ONE
TF_ChIP-seq ENCSR860ONE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF15" and target="KLF15"]
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| Id: | TF_ChIP-seq/ENCSR860ONE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR860ONE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF15" and target="KLF15"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KLF15 output_type: IDR thresholded peaks audit_internal_action: File {ENCFF663PTR|/files/ENCFF663PTR/} with status 'released' is derived from file {ENCFF399LFU|/files/ENCFF399LFU/} with status 'in progress'. audit_internal_action: Released analysis {ENCAN806OXI|/analyses/ENCAN806OXI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF878KQO|/files/ENCFF878KQO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF878KQO|/files/ENCFF878KQO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.46. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF663PTR|/files/ENCFF663PTR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.65 and a self consistency ratio of 2.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR860ONE | float |
TF_ChIP-seq_ENCSR860ONE |
TF_ChIP-seq ENCSR860ONE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF15" and target="KLF15"]
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[7.43, 436] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF663PTR.bed.gz | 117.76 KB | 74328d90360dc5e521c5abac50954df2 |
| ENCFF663PTR.bed.gz.dvc | 100.0 B | 4813c8cd911b64181b791ed4335c7f19 |
| ENCFF663PTR.tabix.bed.gz | 87.53 KB | 11ba48b7dca192c433acc4434d65b768 |
| ENCFF663PTR.tabix.bed.gz.dvc | 105.0 B | 9636b6fd49d18d2efd63a2587f8b7e7b |
| ENCFF663PTR.tabix.bed.gz.tbi | 49.64 KB | e5c781086eb2a09b5b9321757047e556 |
| ENCFF663PTR.tabix.bed.gz.tbi.dvc | 109.0 B | ff4c560aa8fe84a08fa3f528c05d9072 |
| genomic_resource.yaml | 3.67 KB | 6acd60e7bf4aa713f1f1f4aec14d3252 |
| genomic_resource_original.yaml | 3.51 KB | 6472df399bffc55a886bf9d811c37786 |
| statistics/ |