TF_ChIP-seq_ENCSR859JGF
TF_ChIP-seq ENCSR859JGF [biosample_summary="Homo sapiens HepG2" and target="ATM"]
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| Id: | TF_ChIP-seq/ENCSR859JGF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR859JGF [biosamplesummary="Homo sapiens HepG2" and target="ATM"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF906FVB|/files/ENCFF906FVB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN310BLY|/analyses/ENCAN310BLY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF844MJH|/files/ENCFF844MJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF844MJH|/files/ENCFF844MJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.73. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF263VMT|/files/ENCFF263VMT/}, {ENCFF850GXY|/files/ENCFF850GXY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 6.20 and a self consistency ratio of 1.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF902IRY|/files/ENCFF902IRY/}, {ENCFF906FVB|/files/ENCFF906FVB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 6.20 and a self consistency ratio of 1.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR859JGF | float |
TF_ChIP-seq_ENCSR859JGF |
TF_ChIP-seq ENCSR859JGF [biosample_summary="Homo sapiens HepG2" and target="ATM"]
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[12.6, 2.28e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF906FVB.bed.gz | 43.99 KB | 9e5c3e723f82f10ab01212a64f58f0bf |
| ENCFF906FVB.bed.gz.dvc | 99.0 B | ae2610e0eff53a0fe8f52c576a24bd65 |
| ENCFF906FVB.tabix.bed.gz | 28.73 KB | 82bcd2ad21609790e18d5fa0c54e8626 |
| ENCFF906FVB.tabix.bed.gz.dvc | 105.0 B | 6a273d26463b7d7b6dd3dc952f52fea8 |
| ENCFF906FVB.tabix.bed.gz.tbi | 24.98 KB | 8a3907782c1c42b3440ce14a8b9e4fb7 |
| ENCFF906FVB.tabix.bed.gz.tbi.dvc | 109.0 B | af6c767818834018acebaafae261d255 |
| genomic_resource.yaml | 3.96 KB | 53f74f921cf70418b60f294d7be6167d |
| genomic_resource_original.yaml | 3.87 KB | d62f14d17addb34bd9dd9ff86fb2e640 |
| statistics/ |