TF_ChIP-seq_ENCSR857PBV
TF_ChIP-seq ENCSR857PBV [biosample_summary="Homo sapiens 22Rv1" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR857PBV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR857PBV [biosamplesummary="Homo sapiens 22Rv1" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF730MQM|/files/ENCFF730MQM/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN246ORX|/analyses/ENCAN246ORX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF319QUU|/files/ENCFF319QUU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF319QUU|/files/ENCFF319QUU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR857PBV | float |
TF_ChIP-seq_ENCSR857PBV |
TF_ChIP-seq ENCSR857PBV [biosample_summary="Homo sapiens 22Rv1" and target="CTCF"]
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[19.2, 3.41e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730MQM.bed.gz | 1.54 MB | 04b5142bf0175e83b5b6f89cfcff859d |
| ENCFF730MQM.bed.gz.dvc | 101.0 B | e3bba55f7bfb4d36111f953a9836d868 |
| ENCFF730MQM.tabix.bed.gz | 952.13 KB | efa9a00f82e72889489b728bece2dc25 |
| ENCFF730MQM.tabix.bed.gz.dvc | 106.0 B | 4233c8e25df8d07f8511965a1cc6da51 |
| ENCFF730MQM.tabix.bed.gz.tbi | 346.4 KB | e1a5b97705a882a6eed5e409c85f6c0d |
| ENCFF730MQM.tabix.bed.gz.tbi.dvc | 110.0 B | 4c22866c5964c0d81237e0c99d9d8151 |
| genomic_resource.yaml | 2.83 KB | 889b8ae354b50c34b399597a9eb9d6be |
| genomic_resource_original.yaml | 2.73 KB | 744cc2206d0c5e0f76ec55c3116c8121 |
| statistics/ |