| Id: | TF_ChIP-seq/ENCSR854ORP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR854ORP [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF350" and target="ZNF350"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF350 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN182LVZ|/analyses/ENCAN182LVZ/} has in progress subobject document {864d3fe6-4260-472e-8605-e1749851a8a1|/documents/864d3fe6-4260-472e-8605-e1749851a8a1/} audit_internal_action: Released analysis {ENCAN182LVZ|/analyses/ENCAN182LVZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF231POH|/files/ENCFF231POH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF231POH|/files/ENCFF231POH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR854ORP | float |
TF_ChIP-seq_ENCSR854ORP |
TF_ChIP-seq ENCSR854ORP [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF350" and target="ZNF350"]
|
 |
[22.6, 3.55e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF064ZJO.bed.gz | 38.83 KB | b1523cf80ec48a555937f3485fff9bcd |
| ENCFF064ZJO.bed.gz.dvc | 99.0 B | 85132d2311af9c2dbd56d7590572c8e6 |
| ENCFF064ZJO.tabix.bed.gz | 26.08 KB | 13615448596b97c8629db27618971d05 |
| ENCFF064ZJO.tabix.bed.gz.dvc | 105.0 B | e776607f9c5d1eab51266d4842bac3cc |
| ENCFF064ZJO.tabix.bed.gz.tbi | 23.33 KB | e272ee54dc11e0778939fe230155c338 |
| ENCFF064ZJO.tabix.bed.gz.tbi.dvc | 109.0 B | fded2b6797c2db92f7bdb31b04dec298 |
| genomic_resource.yaml | 3.29 KB | a1f929cd6a5db2d6830de00f8caebf2c |
| genomic_resource_original.yaml | 3.11 KB | f6bb3b49afa7be62819e9554e4df2eb6 |
| statistics/ |