TF_ChIP-seq_ENCSR853BYT
TF_ChIP-seq ENCSR853BYT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF292" and target="ZNF292"]
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| Id: | TF_ChIP-seq/ENCSR853BYT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR853BYT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF292" and target="ZNF292"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF292 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN860WGX|/analyses/ENCAN860WGX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF036XXM|/files/ENCFF036XXM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 10609109 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF292-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF435NVO|/files/ENCFF435NVO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF435NVO|/files/ENCFF435NVO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF036XXM|/files/ENCFF036XXM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF036XXM|/files/ENCFF036XXM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.55. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF233ZOX|/files/ENCFF233ZOX/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.57 and a self consistency ratio of 2.41. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR853BYT | float |
TF_ChIP-seq_ENCSR853BYT |
TF_ChIP-seq ENCSR853BYT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF292" and target="ZNF292"]
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[8.33, 352] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233ZOX.bed.gz | 443.03 KB | 7ef5636cca6228d9ed2e6097631a426c |
| ENCFF233ZOX.bed.gz.dvc | 100.0 B | 43b4a96c5e7703208fae9f0df89ede5f |
| ENCFF233ZOX.tabix.bed.gz | 357.67 KB | 314f92d0a7cf1678e84ef186646163e7 |
| ENCFF233ZOX.tabix.bed.gz.dvc | 106.0 B | c0f5a793da2e84a71f87aa4545c63c1e |
| ENCFF233ZOX.tabix.bed.gz.tbi | 138.39 KB | 12aef9423a1bab92a300b342911b26d8 |
| ENCFF233ZOX.tabix.bed.gz.tbi.dvc | 110.0 B | efc6f8d8dc00c48acd1f16181a276fcf |
| genomic_resource.yaml | 5.25 KB | 1969430a97344a34bd3a5ffb5c5262e8 |
| genomic_resource_original.yaml | 5.08 KB | e3792b40a90744a053736520d7466e7e |
| statistics/ |