TF_ChIP-seq_ENCSR851BNE
TF_ChIP-seq ENCSR851BNE [biosample_summary="Homo sapiens K562" and target="MEIS2"]
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| Id: | TF_ChIP-seq/ENCSR851BNE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR851BNE [biosamplesummary="Homo sapiens K562" and target="MEIS2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN064ITT|/analyses/ENCAN064ITT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF608THC|/files/ENCFF608THC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF608THC|/files/ENCFF608THC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR851BNE | float |
TF_ChIP-seq_ENCSR851BNE |
TF_ChIP-seq ENCSR851BNE [biosample_summary="Homo sapiens K562" and target="MEIS2"]
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[38.4, 2.26e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF613RNG.bed.gz | 806.47 KB | 5a8a7a2c1d04e8655631cd819f8e4127 |
| ENCFF613RNG.bed.gz.dvc | 100.0 B | 10fbef690056eeebae52d5654e796a83 |
| ENCFF613RNG.tabix.bed.gz | 633.19 KB | 6c291741ac0f76ecf9af88f0999b0eda |
| ENCFF613RNG.tabix.bed.gz.dvc | 106.0 B | 81a9d3ab4e9c0639b342dea8958ae5d9 |
| ENCFF613RNG.tabix.bed.gz.tbi | 274.99 KB | c7e144e13b7074da93b63575fc8a4f31 |
| ENCFF613RNG.tabix.bed.gz.tbi.dvc | 110.0 B | b0940ffda579c3cc49d3032e34adf46b |
| genomic_resource.yaml | 3.19 KB | 121378144858a2405f35a15755976b92 |
| genomic_resource_original.yaml | 3.09 KB | f08b5d8dc7734e50bfac374d30c7ba19 |
| statistics/ |