TF_ChIP-seq_ENCSR850YDX
TF_ChIP-seq ENCSR850YDX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7A" and target="ZBTB7A"]
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| Id: | TF_ChIP-seq/ENCSR850YDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR850YDX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7A" and target="ZBTB7A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN405XTQ|/analyses/ENCAN405XTQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF688RUL|/files/ENCFF688RUL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF688RUL|/files/ENCFF688RUL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.88. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF354NEI|/files/ENCFF354NEI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF354NEI|/files/ENCFF354NEI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR850YDX | float |
TF_ChIP-seq_ENCSR850YDX |
TF_ChIP-seq ENCSR850YDX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB7A" and target="ZBTB7A"]
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[10.8, 447] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF406UND.bed.gz | 287.08 KB | 8debb5c87466e6170d4519c58d62ba4f |
| ENCFF406UND.bed.gz.dvc | 100.0 B | b5cf94f1cbc36bcf9153654cfc23f207 |
| ENCFF406UND.tabix.bed.gz | 212.75 KB | 4b0fb5c45e250a7b428186729a362b33 |
| ENCFF406UND.tabix.bed.gz.dvc | 106.0 B | 17cbccfe83abfc14f4ed9fa0b0946c9f |
| ENCFF406UND.tabix.bed.gz.tbi | 92.86 KB | a7031009978084c15f6d99b1f2730b34 |
| ENCFF406UND.tabix.bed.gz.tbi.dvc | 109.0 B | bc125b7905e29ddc2510f2485885d98f |
| genomic_resource.yaml | 4.24 KB | f886cedaa8d30aa989a08f178b2d75e2 |
| genomic_resource_original.yaml | 4.07 KB | b57d0ce7176f42ef043c46526a8765a8 |
| statistics/ |