TF_ChIP-seq_ENCSR849WCQ
TF_ChIP-seq ENCSR849WCQ [biosample_summary="Homo sapiens GM12878" and target="ASH2L"]
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| Id: | TF_ChIP-seq/ENCSR849WCQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR849WCQ [biosamplesummary="Homo sapiens GM12878" and target="ASH2L"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN781WUI|/analyses/ENCAN781WUI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF536XNC|/files/ENCFF536XNC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15625403 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ASH2L-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF741HFQ|/files/ENCFF741HFQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF741HFQ|/files/ENCFF741HFQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.03. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF552EPA|/files/ENCFF552EPA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 5.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR849WCQ | float |
TF_ChIP-seq_ENCSR849WCQ |
TF_ChIP-seq ENCSR849WCQ [biosample_summary="Homo sapiens GM12878" and target="ASH2L"]
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[5.8, 183] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF552EPA.bed.gz | 119.34 KB | 75a7ecfeb65f04a38969cc492a4fd85c |
| ENCFF552EPA.bed.gz.dvc | 100.0 B | 86b17d372bce3dec879734ef3ee18740 |
| ENCFF552EPA.tabix.bed.gz | 97.22 KB | 64b06f2d3f1684cf63a11ad725c2c538 |
| ENCFF552EPA.tabix.bed.gz.dvc | 105.0 B | f2525cc4de0582fdcd21557606e330b8 |
| ENCFF552EPA.tabix.bed.gz.tbi | 53.17 KB | e3852e29c45d097b24884b159eb6b483 |
| ENCFF552EPA.tabix.bed.gz.tbi.dvc | 109.0 B | b7b3dca4ece2f6d0ad77b26121811bd9 |
| genomic_resource.yaml | 3.7 KB | e9d0e9e8dbe66439077f6dabbf2f8acd |
| genomic_resource_original.yaml | 3.6 KB | 5d1d0e4310f22c9464a84d2b79f2ccbf |
| statistics/ |