| Id: | TF_ChIP-seq/ENCSR848QXX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR848QXX [biosamplesummary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1" and target="TSC22D1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN689QFD|/analyses/ENCAN689QFD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF827WRN|/files/ENCFF827WRN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF827WRN|/files/ENCFF827WRN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.46. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF878MWL|/files/ENCFF878MWL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF878MWL|/files/ENCFF878MWL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.45. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR848QXX | float |
TF_ChIP-seq_ENCSR848QXX |
TF_ChIP-seq ENCSR848QXX [biosample_summary="Homo sapiens MCF-7 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D1" and target="TSC22D1"]
|
 |
[16.9, 2.41e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141CBF.bed.gz | 107.35 KB | b72c9ed351085270438f5dae740449b6 |
| ENCFF141CBF.bed.gz.dvc | 100.0 B | af8435df5cec396921e6dfee3eff64e5 |
| ENCFF141CBF.tabix.bed.gz | 68.52 KB | 0df7e640cca99c32c9545440a637168f |
| ENCFF141CBF.tabix.bed.gz.dvc | 105.0 B | f8e89f82ad4c61c3d417aaac5a4b551b |
| ENCFF141CBF.tabix.bed.gz.tbi | 40.29 KB | 6391bcd6fcc8adf4104bec033b9d2200 |
| ENCFF141CBF.tabix.bed.gz.tbi.dvc | 109.0 B | e37adc12452a16daf7e5ab92e3a2eafd |
| genomic_resource.yaml | 4.36 KB | c1bd166cefa047d81a77b69b04874e8d |
| genomic_resource_original.yaml | 4.2 KB | 00cc78c82d27c61c6433267f10567965 |
| statistics/ |