TF_ChIP-seq_ENCSR847PFO
TF_ChIP-seq ENCSR847PFO [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB7" and target="HOXB7"]
×
| Id: | TF_ChIP-seq/ENCSR847PFO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR847PFO [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB7" and target="HOXB7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HOXB7 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN045KWY|/analyses/ENCAN045KWY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF137VSN|/files/ENCFF137VSN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 15628262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HOXB7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF490XXU|/files/ENCFF490XXU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 15709158 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HOXB7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF137VSN|/files/ENCFF137VSN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF137VSN|/files/ENCFF137VSN/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.31. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF490XXU|/files/ENCFF490XXU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF490XXU|/files/ENCFF490XXU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.05. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR847PFO | float |
TF_ChIP-seq_ENCSR847PFO |
TF_ChIP-seq ENCSR847PFO [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens HOXB7" and target="HOXB7"]
|
|
[5.51, 279] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF610SSK.bed.gz | 116.95 KB | dd8534309977fdf4f350f4a6a5843a86 |
| ENCFF610SSK.bed.gz.dvc | 100.0 B | bf2ff232883a4a8e18ab969446bc07c5 |
| ENCFF610SSK.tabix.bed.gz | 91.55 KB | 60408d04f9e7ccadabff7d42d61a73a3 |
| ENCFF610SSK.tabix.bed.gz.dvc | 105.0 B | fca6d8f1d0d88fa038f7e1404d678dbc |
| ENCFF610SSK.tabix.bed.gz.tbi | 51.72 KB | 7e4e2e47d790a33a33a9b7657e1fe18f |
| ENCFF610SSK.tabix.bed.gz.tbi.dvc | 109.0 B | 86a4a88e63e8dd7a41b055945553c2d7 |
| genomic_resource.yaml | 5.21 KB | 710ba532fef61592eb86b7004f05edf6 |
| genomic_resource_original.yaml | 5.05 KB | 315466a2eeb7800028379719c3dcdb82 |
| statistics/ |