TF_ChIP-seq_ENCSR846FMR
TF_ChIP-seq ENCSR846FMR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CC2D1A" and target="CC2D1A"]
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| Id: | TF_ChIP-seq/ENCSR846FMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR846FMR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CC2D1A" and target="CC2D1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CC2D1A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN703GAH|/analyses/ENCAN703GAH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF014FYW|/files/ENCFF014FYW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF014FYW|/files/ENCFF014FYW/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR846FMR | float |
TF_ChIP-seq_ENCSR846FMR |
TF_ChIP-seq ENCSR846FMR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens CC2D1A" and target="CC2D1A"]
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[11.3, 326] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF502SCY.bed.gz | 84.93 KB | 03fa84da4595237b50e3322c58a03eff |
| ENCFF502SCY.bed.gz.dvc | 99.0 B | b538ada406508020d9501de77c7a28ca |
| ENCFF502SCY.tabix.bed.gz | 59.57 KB | eff044f34ac800f5a216adc69f034aeb |
| ENCFF502SCY.tabix.bed.gz.dvc | 105.0 B | 0fa41be54b05a793061b85630bb333f1 |
| ENCFF502SCY.tabix.bed.gz.tbi | 36.96 KB | 46e78edcc62a3fefe4d0801df3cf6d25 |
| ENCFF502SCY.tabix.bed.gz.tbi.dvc | 109.0 B | e5933a1439edb7144a644126d77b5df6 |
| genomic_resource.yaml | 2.97 KB | 3764a66dd58d26cbcfd847a45a5446ed |
| genomic_resource_original.yaml | 2.81 KB | 655296c5576c4e5f95cf8fa2922957cc |
| statistics/ |