TF_ChIP-seq_ENCSR845GGY
TF_ChIP-seq ENCSR845GGY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263" and target="ZNF263"]
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| Id: | TF_ChIP-seq/ENCSR845GGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR845GGY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263" and target="ZNF263"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN647HBS|/analyses/ENCAN647HBS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF100TAR|/files/ENCFF100TAR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF100TAR|/files/ENCFF100TAR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF171TAM|/files/ENCFF171TAM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF171TAM|/files/ENCFF171TAM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.13. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF295XBK|/files/ENCFF295XBK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.47. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR845GGY | float |
TF_ChIP-seq_ENCSR845GGY |
TF_ChIP-seq ENCSR845GGY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF263" and target="ZNF263"]
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[10.2, 834] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF295XBK.bed.gz | 334.96 KB | f4e613e134764f693b500d2eae745a99 |
| ENCFF295XBK.bed.gz.dvc | 100.0 B | a00df0b36cf9190bc6cf22ca602a82eb |
| ENCFF295XBK.tabix.bed.gz | 255.93 KB | b0be818c2f28667720de3058bb4f4b42 |
| ENCFF295XBK.tabix.bed.gz.dvc | 106.0 B | f64c569a42be9ab28949a9b0c490e6b8 |
| ENCFF295XBK.tabix.bed.gz.tbi | 105.57 KB | b81885380ff09b2607ffdb3ce3f52b4f |
| ENCFF295XBK.tabix.bed.gz.tbi.dvc | 110.0 B | 2c6b97801a686ffb32b724c4d50e4357 |
| genomic_resource.yaml | 4.76 KB | 86ff39cf795e44629345cd6c374d5882 |
| genomic_resource_original.yaml | 4.59 KB | 0721f06d7b1e4b507c9c94d88ef1c729 |
| statistics/ |