TF_ChIP-seq_ENCSR841NDX
TF_ChIP-seq ENCSR841NDX [biosample_summary="Homo sapiens GM12878" and target="ELF1"]
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| Id: | TF_ChIP-seq/ENCSR841NDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR841NDX [biosamplesummary="Homo sapiens GM12878" and target="ELF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN716WKR|/analyses/ENCAN716WKR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN716WKR|/analyses/ENCAN716WKR/} has in progress subobject document {13f91034-e194-43eb-880d-8cdeaedc8c49|/documents/13f91034-e194-43eb-880d-8cdeaedc8c49/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF041QIN|/files/ENCFF041QIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF041QIN|/files/ENCFF041QIN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF290PIQ|/files/ENCFF290PIQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF290PIQ|/files/ENCFF290PIQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR841NDX | float |
TF_ChIP-seq_ENCSR841NDX |
TF_ChIP-seq ENCSR841NDX [biosample_summary="Homo sapiens GM12878" and target="ELF1"]
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[14.9, 1.03e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF479HJF.bed.gz | 601.8 KB | f169d9998ed1995c7bfcead7633ada75 |
| ENCFF479HJF.bed.gz.dvc | 100.0 B | ec1032db3d00148cff97028322c1a97c |
| ENCFF479HJF.tabix.bed.gz | 428.77 KB | ac3789a96cb3d02586343c89da9eee9b |
| ENCFF479HJF.tabix.bed.gz.dvc | 106.0 B | baae2a45319b85acabcb8ba44bfa42a9 |
| ENCFF479HJF.tabix.bed.gz.tbi | 187.66 KB | 3e08243d982b7ac1b327219a09bc1d12 |
| ENCFF479HJF.tabix.bed.gz.tbi.dvc | 110.0 B | 9c2bc5efe4faf445b2141acf6f44521b |
| genomic_resource.yaml | 4.19 KB | 99b8b6fcbc2048062bff0dd7fc8e0d89 |
| genomic_resource_original.yaml | 4.09 KB | 779cb03343af50de5cf8e9993ff50ec7 |
| statistics/ |