TF_ChIP-seq_ENCSR841GLE
TF_ChIP-seq ENCSR841GLE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"]
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| Id: | TF_ChIP-seq/ENCSR841GLE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR841GLE [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN502AVH|/analyses/ENCAN502AVH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF923WBH|/files/ENCFF923WBH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF923WBH|/files/ENCFF923WBH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF485BXY|/files/ENCFF485BXY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF485BXY|/files/ENCFF485BXY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR841GLE | float |
TF_ChIP-seq_ENCSR841GLE |
TF_ChIP-seq ENCSR841GLE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF217" and target="ZNF217"]
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[7.87, 214] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF515LWL.bed.gz | 10.88 KB | 3d33786ffc6dc671531cf38bde441b6a |
| ENCFF515LWL.bed.gz.dvc | 99.0 B | 5023ad3ade1bd0c45184292e7e0ef3c9 |
| ENCFF515LWL.tabix.bed.gz | 7.07 KB | 2a4d0e2210694256706c20989f66c46f |
| ENCFF515LWL.tabix.bed.gz.dvc | 104.0 B | 098611ca055d405c3ca67cfab884c3ce |
| ENCFF515LWL.tabix.bed.gz.tbi | 9.23 KB | 1fab4d4740227355100b87a0341bc079 |
| ENCFF515LWL.tabix.bed.gz.tbi.dvc | 108.0 B | b8c4410c449b1cc4fd80f50bae3d0ee0 |
| genomic_resource.yaml | 4.24 KB | 5bef0381e7725d3c40e4496fb35c8d82 |
| genomic_resource_original.yaml | 4.07 KB | 396ef26785a9f511361600d65e836c29 |
| statistics/ |