TF_ChIP-seq_ENCSR839AJZ
TF_ChIP-seq ENCSR839AJZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446" and target="ZNF446"]
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| Id: | TF_ChIP-seq/ENCSR839AJZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR839AJZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446" and target="ZNF446"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN132KPJ|/analyses/ENCAN132KPJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN132KPJ|/analyses/ENCAN132KPJ/} has in progress subobject document {c1a014ec-e282-4b16-9ad5-8fa47bfd3edd|/documents/c1a014ec-e282-4b16-9ad5-8fa47bfd3edd/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF052NBL|/files/ENCFF052NBL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF052NBL|/files/ENCFF052NBL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.43. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF520EKJ|/files/ENCFF520EKJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF520EKJ|/files/ENCFF520EKJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR839AJZ | float |
TF_ChIP-seq_ENCSR839AJZ |
TF_ChIP-seq ENCSR839AJZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF446" and target="ZNF446"]
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[10.1, 499] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF645VCZ.bed.gz | 183.54 KB | a31a0e8f65df16cbdf68337634f79c05 |
| ENCFF645VCZ.bed.gz.dvc | 100.0 B | 84028b2ca1a3a664f2476b7792aa605c |
| ENCFF645VCZ.tabix.bed.gz | 140.04 KB | bbdf6a5114e81303595ce33972016ffd |
| ENCFF645VCZ.tabix.bed.gz.dvc | 106.0 B | 84b4fc114d129dfd67e64c8b8cd34713 |
| ENCFF645VCZ.tabix.bed.gz.tbi | 65.15 KB | 4ec6ada67992df18be5521d9725034f5 |
| ENCFF645VCZ.tabix.bed.gz.tbi.dvc | 109.0 B | 8bec317026bca8f3c26f2d4ec56a35aa |
| genomic_resource.yaml | 4.45 KB | d7b605456c972260c1bca8aae4bc26b2 |
| genomic_resource_original.yaml | 4.29 KB | e8ad31899fa68bbf0d6e41d4bd630ab1 |
| statistics/ |