TF_ChIP-seq_ENCSR836SPL
TF_ChIP-seq ENCSR836SPL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1" and target="E2F1"]
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| Id: | TF_ChIP-seq/ENCSR836SPL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR836SPL [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1" and target="E2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E2F1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN995SQB|/analyses/ENCAN995SQB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF346OIU|/files/ENCFF346OIU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF346OIU|/files/ENCFF346OIU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF678RRI|/files/ENCFF678RRI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF678RRI|/files/ENCFF678RRI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR836SPL | float |
TF_ChIP-seq_ENCSR836SPL |
TF_ChIP-seq ENCSR836SPL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens E2F1" and target="E2F1"]
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[8.27, 359] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF548QOU.bed.gz | 82.61 KB | 8da9f7ffdcce2d5edb442e60bdd6ab23 |
| ENCFF548QOU.bed.gz.dvc | 99.0 B | 19e58719ba99218aa8972f214120f13d |
| ENCFF548QOU.tabix.bed.gz | 60.27 KB | bde4bc5562263ad827aa557938d15cc0 |
| ENCFF548QOU.tabix.bed.gz.dvc | 105.0 B | 1842f5f4c394635ea034210e7cad128c |
| ENCFF548QOU.tabix.bed.gz.tbi | 40.62 KB | e79ff3e7a046943bdfddc191fc246b13 |
| ENCFF548QOU.tabix.bed.gz.tbi.dvc | 109.0 B | 4b2d635bc863488d8ac7b8a6323d3160 |
| genomic_resource.yaml | 4.22 KB | 59651440f1939df32278a51a80ffc9e1 |
| genomic_resource_original.yaml | 4.06 KB | 2d9032eac6622976f6e788b2163072a7 |
| statistics/ |