TF_ChIP-seq_ENCSR834XPX
TF_ChIP-seq ENCSR834XPX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR834XPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR834XPX [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (55 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (55 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN366PZR|/analyses/ENCAN366PZR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF124VAD|/files/ENCFF124VAD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF124VAD|/files/ENCFF124VAD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR834XPX | float |
TF_ChIP-seq_ENCSR834XPX |
TF_ChIP-seq ENCSR834XPX [biosample_summary="Homo sapiens heart left ventricle tissue male adult (55 years)" and target="CTCF"]
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[6.02, 408] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF768SKG.bed.gz | 786.01 KB | e5ce3af9caa9fc3058cc42233e8004c7 |
| ENCFF768SKG.bed.gz.dvc | 100.0 B | 4debcdcc5106ee8216fab344ef0fe365 |
| ENCFF768SKG.tabix.bed.gz | 593.07 KB | fbbf6a2de6c411ff4e87fafeae7912e9 |
| ENCFF768SKG.tabix.bed.gz.dvc | 106.0 B | 7c2c181693b2300c16cd7c5d18fe1537 |
| ENCFF768SKG.tabix.bed.gz.tbi | 294.71 KB | 29509c290491554d86f0e7f0e3c391a6 |
| ENCFF768SKG.tabix.bed.gz.tbi.dvc | 110.0 B | bc573bf956d33ddc88074db36295d6ea |
| genomic_resource.yaml | 2.76 KB | 579524b079c533706f0594d5aa424c1d |
| genomic_resource_original.yaml | 2.62 KB | e1a3587a800076b132552503c76a2aec |
| statistics/ |