TF_ChIP-seq_ENCSR832PID
TF_ChIP-seq ENCSR832PID [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318" and target="ZNF318"]
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| Id: | TF_ChIP-seq/ENCSR832PID |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR832PID [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318" and target="ZNF318"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN470WLZ|/analyses/ENCAN470WLZ/} has in progress subobject document {83ceda03-8b4d-4c53-980b-c2ddb09d04d8|/documents/83ceda03-8b4d-4c53-980b-c2ddb09d04d8/} audit_internal_action: Released analysis {ENCAN470WLZ|/analyses/ENCAN470WLZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF324ZKK|/files/ENCFF324ZKK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF324ZKK|/files/ENCFF324ZKK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.27. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF888NNF|/files/ENCFF888NNF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF888NNF|/files/ENCFF888NNF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR832PID | float |
TF_ChIP-seq_ENCSR832PID |
TF_ChIP-seq ENCSR832PID [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF318" and target="ZNF318"]
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[12.6, 384] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF720DYW.bed.gz | 146.41 KB | aed4ec7e497207faf5a1472cdf577cff |
| ENCFF720DYW.bed.gz.dvc | 100.0 B | bcc7bdba7f2b685add56158d1cb9098f |
| ENCFF720DYW.tabix.bed.gz | 107.3 KB | 1ded3265c86f1e347615e1c4adda504a |
| ENCFF720DYW.tabix.bed.gz.dvc | 106.0 B | 181b231a871ea2e8d5e0627d37b94769 |
| ENCFF720DYW.tabix.bed.gz.tbi | 56.63 KB | f1b63b491674364f2380873a50529e53 |
| ENCFF720DYW.tabix.bed.gz.tbi.dvc | 109.0 B | b5fb8ecb8c4e9d700676bbd2db0a06da |
| genomic_resource.yaml | 4.45 KB | 284a2eedd0ec4c16c9dffc3342e8b67e |
| genomic_resource_original.yaml | 4.29 KB | 5a3e07bc41bd8dd4ca1c1a72a88658c7 |
| statistics/ |