TF_ChIP-seq_ENCSR831EIW
TF_ChIP-seq ENCSR831EIW [biosample_summary="Homo sapiens HEK293T" and target="FOXM1"]
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| Id: | TF_ChIP-seq/ENCSR831EIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR831EIW [biosamplesummary="Homo sapiens HEK293T" and target="FOXM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN814AWP|/analyses/ENCAN814AWP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF056GKK|/files/ENCFF056GKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF056GKK|/files/ENCFF056GKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF052TDK|/files/ENCFF052TDK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF052TDK|/files/ENCFF052TDK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.31. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF144JMY|/files/ENCFF144JMY/}, {ENCFF490QLA|/files/ENCFF490QLA/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 3.05. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF270TGO|/files/ENCFF270TGO/}, {ENCFF932EVL|/files/ENCFF932EVL/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.71 and a self consistency ratio of 3.05. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR831EIW | float |
TF_ChIP-seq_ENCSR831EIW |
TF_ChIP-seq ENCSR831EIW [biosample_summary="Homo sapiens HEK293T" and target="FOXM1"]
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[14.5, 2.57e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF932EVL.bed.gz | 100.07 KB | 8324015652ce03e8a0be6cd9278a3f2a |
| ENCFF932EVL.bed.gz.dvc | 100.0 B | 78e55b0970d76cfb0915d83cfd7ab7a7 |
| ENCFF932EVL.tabix.bed.gz | 65.91 KB | ed1d89cb566c4142269dffee6e4f1f42 |
| ENCFF932EVL.tabix.bed.gz.dvc | 105.0 B | 5b0542422d5203953d640265a1d51e72 |
| ENCFF932EVL.tabix.bed.gz.tbi | 50.32 KB | 6a441c6fa4bbbd1c7ef2785d85e8a259 |
| ENCFF932EVL.tabix.bed.gz.tbi.dvc | 109.0 B | 69b4c7d966a3ba0c5dc1b5b75440a176 |
| genomic_resource.yaml | 5.08 KB | 182fc1cb0b7d4b8433affc6c8dfa037d |
| genomic_resource_original.yaml | 4.98 KB | 16e551171d802c87aa84fd3bbdda585e |
| statistics/ |