TF_ChIP-seq_ENCSR830LDY
TF_ChIP-seq ENCSR830LDY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2" and target="MEIS2"]
×
| Id: | TF_ChIP-seq/ENCSR830LDY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR830LDY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2" and target="MEIS2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN892BLZ|/analyses/ENCAN892BLZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF979HDL|/files/ENCFF979HDL/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF979HDL|/files/ENCFF979HDL/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.70. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR830LDY | float |
TF_ChIP-seq_ENCSR830LDY |
TF_ChIP-seq ENCSR830LDY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS2" and target="MEIS2"]
|
|
[8.03, 491] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF647OBG.bed.gz | 366.78 KB | 75bb46871c376c14aafd8ad338153606 |
| ENCFF647OBG.bed.gz.dvc | 100.0 B | ee227d78aeba2343490abb13cce304d0 |
| ENCFF647OBG.tabix.bed.gz | 275.29 KB | 9ad3b18547de29a242f80ff812c011a4 |
| ENCFF647OBG.tabix.bed.gz.dvc | 106.0 B | 2caecfb5856c8deee13b1b8861b5eb18 |
| ENCFF647OBG.tabix.bed.gz.tbi | 122.65 KB | bdb89e44ec76c0bbafd612c9d45480cb |
| ENCFF647OBG.tabix.bed.gz.tbi.dvc | 110.0 B | 9f897531355e7ab63cd4c4e166ef3293 |
| genomic_resource.yaml | 2.96 KB | 89d93f259bed511e0c58d0c08d72fa33 |
| genomic_resource_original.yaml | 2.8 KB | ad9d6211b396256d997b8ca9426f0c33 |
| statistics/ |