TF_ChIP-seq_ENCSR830FJY
TF_ChIP-seq ENCSR830FJY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18" and target="SOX18"]
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| Id: | TF_ChIP-seq/ENCSR830FJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR830FJY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18" and target="SOX18"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SOX18 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN763IGK|/analyses/ENCAN763IGK/} has in progress subobject document {963449e2-4f8b-45f9-9555-4f8be0752672|/documents/963449e2-4f8b-45f9-9555-4f8be0752672/} audit_internal_action: Released analysis {ENCAN763IGK|/analyses/ENCAN763IGK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF801JRG|/files/ENCFF801JRG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF801JRG|/files/ENCFF801JRG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF717RPJ|/files/ENCFF717RPJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF717RPJ|/files/ENCFF717RPJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR830FJY | float |
TF_ChIP-seq_ENCSR830FJY |
TF_ChIP-seq ENCSR830FJY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX18" and target="SOX18"]
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[11.7, 413] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF338YFQ.bed.gz | 143.07 KB | c3b15f3bae75e0c11d20e67ad8147da8 |
| ENCFF338YFQ.bed.gz.dvc | 100.0 B | 952addf04a0d32096e459ce35d0c7b8f |
| ENCFF338YFQ.tabix.bed.gz | 103.88 KB | 3e4d53d32febc20c51bffad4443c23b0 |
| ENCFF338YFQ.tabix.bed.gz.dvc | 106.0 B | bcd1f5277879b8f7e73bc7de740a77b6 |
| ENCFF338YFQ.tabix.bed.gz.tbi | 54.97 KB | ee5fb13e7db386a89c6724696c297e7e |
| ENCFF338YFQ.tabix.bed.gz.tbi.dvc | 109.0 B | bf6a5a1e7c2c8441fd60627fb4159a4a |
| genomic_resource.yaml | 4.44 KB | be9a4967f95881cc18be9584ebc431e5 |
| genomic_resource_original.yaml | 4.28 KB | c03e2c3b76fdf97af2279b49d50f3427 |
| statistics/ |