TF_ChIP-seq_ENCSR829UCH
TF_ChIP-seq ENCSR829UCH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1" and target="NFXL1"]
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| Id: | TF_ChIP-seq/ENCSR829UCH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR829UCH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1" and target="NFXL1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN031CUR|/analyses/ENCAN031CUR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF375CBS|/files/ENCFF375CBS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF375CBS|/files/ENCFF375CBS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF627SFF|/files/ENCFF627SFF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF627SFF|/files/ENCFF627SFF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR829UCH | float |
TF_ChIP-seq_ENCSR829UCH |
TF_ChIP-seq ENCSR829UCH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFXL1" and target="NFXL1"]
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[16.2, 1.32e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF201WFM.bed.gz | 59.09 KB | f7f731e4b0dedd442a7e2b056c1c0b60 |
| ENCFF201WFM.bed.gz.dvc | 99.0 B | fb5ea308aa480359564ab927998c5758 |
| ENCFF201WFM.tabix.bed.gz | 38.85 KB | 5bfb23bc1861b45f772c4cf19714fba7 |
| ENCFF201WFM.tabix.bed.gz.dvc | 105.0 B | 3637a16216f1ab8ecce2c1214985d837 |
| ENCFF201WFM.tabix.bed.gz.tbi | 28.26 KB | cb7e3d8ca3a3f664a4caf5b53766f035 |
| ENCFF201WFM.tabix.bed.gz.tbi.dvc | 109.0 B | 492cd279fec6d7855473082cf2af93bc |
| genomic_resource.yaml | 4.23 KB | 94f85f63fa7c44c0d34216b11f4449ae |
| genomic_resource_original.yaml | 4.07 KB | 9b7da26ba87bda9e60334aa366815efd |
| statistics/ |