TF_ChIP-seq_ENCSR822CCM
TF_ChIP-seq ENCSR822CCM [biosample_summary="Homo sapiens K562" and target="ARID1B"]
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| Id: | TF_ChIP-seq/ENCSR822CCM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR822CCM [biosamplesummary="Homo sapiens K562" and target="ARID1B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN123ASK|/analyses/ENCAN123ASK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN123ASK|/analyses/ENCAN123ASK/} has in progress subobject document {416e4de8-cc81-48ac-9adc-f6d7f648381e|/documents/416e4de8-cc81-48ac-9adc-f6d7f648381e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF667NSC|/files/ENCFF667NSC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF667NSC|/files/ENCFF667NSC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR822CCM | float |
TF_ChIP-seq_ENCSR822CCM |
TF_ChIP-seq ENCSR822CCM [biosample_summary="Homo sapiens K562" and target="ARID1B"]
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[21.4, 1.86e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF879NTL.bed.gz | 959.93 KB | 71887b55e96bd97639f28521611e87ae |
| ENCFF879NTL.bed.gz.dvc | 100.0 B | 9660a3916d9cc3976fad7579eddefd4c |
| ENCFF879NTL.tabix.bed.gz | 652.22 KB | fc1ea1afda38d8918e215d39fa007668 |
| ENCFF879NTL.tabix.bed.gz.dvc | 106.0 B | 5ff24fc97e4845af3d5119a59909d5e1 |
| ENCFF879NTL.tabix.bed.gz.tbi | 240.69 KB | 944383a44b98587a6b0023e49332118a |
| ENCFF879NTL.tabix.bed.gz.tbi.dvc | 110.0 B | 43ed43df570d76eb64309d2c8544a5bd |
| genomic_resource.yaml | 3.18 KB | 256cd6e873c60384342566fd2d347228 |
| genomic_resource_original.yaml | 3.09 KB | 69fb5c76de4059e58df2973378bfe74c |
| statistics/ |