TF_ChIP-seq_ENCSR820GND
TF_ChIP-seq ENCSR820GND [biosample_summary="Homo sapiens K562" and target="RNF2"]
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| Id: | TF_ChIP-seq/ENCSR820GND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR820GND [biosamplesummary="Homo sapiens K562" and target="RNF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN295YCK|/analyses/ENCAN295YCK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN295YCK|/analyses/ENCAN295YCK/} has in progress subobject document {4aacea1d-cf72-48ed-8933-c8f60fdccd10|/documents/4aacea1d-cf72-48ed-8933-c8f60fdccd10/} audit_warning: Processed alignments file {ENCFF044UGD|/files/ENCFF044UGD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19717173 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RNF2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF408XPG|/files/ENCFF408XPG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.21 and a self consistency ratio of 2.02. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR820GND | float |
TF_ChIP-seq_ENCSR820GND |
TF_ChIP-seq ENCSR820GND [biosample_summary="Homo sapiens K562" and target="RNF2"]
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[10.8, 1.19e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF408XPG.bed.gz | 129.34 KB | 3d8edcf4c940d671416599b4823ab2bb |
| ENCFF408XPG.bed.gz.dvc | 100.0 B | 12fd19f07776e064b886282ebfbe058e |
| ENCFF408XPG.tabix.bed.gz | 87.13 KB | 1333d6041c6410195022cb89e1ba1e91 |
| ENCFF408XPG.tabix.bed.gz.dvc | 105.0 B | 2ff5471ff41237464b74774525188f5a |
| ENCFF408XPG.tabix.bed.gz.tbi | 48.2 KB | 41e7b324b76618d8b0e3e058a1083bd8 |
| ENCFF408XPG.tabix.bed.gz.tbi.dvc | 109.0 B | 3900310e7f94aaeed20a3b3a2a40310f |
| genomic_resource.yaml | 2.6 KB | 34021e72b887cee11c982eb92f95c5a9 |
| genomic_resource_original.yaml | 2.5 KB | 514488b697d8d97f3920e0adfcc4ae60 |
| statistics/ |