TF_ChIP-seq_ENCSR819LHG
TF_ChIP-seq ENCSR819LHG [biosample_summary="Homo sapiens K562" and target="FOXA1"]
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| Id: | TF_ChIP-seq/ENCSR819LHG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR819LHG [biosamplesummary="Homo sapiens K562" and target="FOXA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF765NAN|/files/ENCFF765NAN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN127NQR|/analyses/ENCAN127NQR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF364SJK|/files/ENCFF364SJK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF364SJK|/files/ENCFF364SJK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.77. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF611PXX|/files/ENCFF611PXX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF611PXX|/files/ENCFF611PXX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.51. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR819LHG | float |
TF_ChIP-seq_ENCSR819LHG |
TF_ChIP-seq ENCSR819LHG [biosample_summary="Homo sapiens K562" and target="FOXA1"]
|
|
[11.5, 3.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF765NAN.bed.gz | 25.41 KB | 7adb246f7f66d376afbf4f862b272fbc |
| ENCFF765NAN.bed.gz.dvc | 99.0 B | e9d36c4fea78d3a73f2cab4f699125c9 |
| ENCFF765NAN.tabix.bed.gz | 16.6 KB | 56b34312c075ae2e58236e0a73efa97d |
| ENCFF765NAN.tabix.bed.gz.dvc | 105.0 B | 59f78007cee617b03c12219df6d147b9 |
| ENCFF765NAN.tabix.bed.gz.tbi | 18.37 KB | 2ba8b43a14be16bdbee16f633323c791 |
| ENCFF765NAN.tabix.bed.gz.tbi.dvc | 109.0 B | 294d8d15b7a853f3fb0b6b97d71e52f5 |
| genomic_resource.yaml | 4.13 KB | 487f60b04b422e6c709c8999d68e0bbf |
| genomic_resource_original.yaml | 4.03 KB | 76263b842026175671887b509fe68477 |
| statistics/ |