TF_ChIP-seq_ENCSR817FMN
TF_ChIP-seq ENCSR817FMN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"]
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| Id: | TF_ChIP-seq/ENCSR817FMN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR817FMN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN223ZTH|/analyses/ENCAN223ZTH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF919CDT|/files/ENCFF919CDT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF919CDT|/files/ENCFF919CDT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.38. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF217UCM|/files/ENCFF217UCM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF217UCM|/files/ENCFF217UCM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.87. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF303CVC|/files/ENCFF303CVC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR817FMN | float |
TF_ChIP-seq_ENCSR817FMN |
TF_ChIP-seq ENCSR817FMN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens TEAD4" and target="TEAD4"]
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[12.8, 391] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF303CVC.bed.gz | 72.49 KB | 3ac930fb7df2fdcfd0236e8c01776281 |
| ENCFF303CVC.bed.gz.dvc | 99.0 B | aa44d10da5352dca7bd1ec25b87052b3 |
| ENCFF303CVC.tabix.bed.gz | 50.11 KB | 1924fc5a1f130bd2c736347208ada958 |
| ENCFF303CVC.tabix.bed.gz.dvc | 105.0 B | 5edd94aa76087eca11fde8c1eafc7d15 |
| ENCFF303CVC.tabix.bed.gz.tbi | 32.19 KB | 098d8f3892a42556df4db7735998adcf |
| ENCFF303CVC.tabix.bed.gz.tbi.dvc | 109.0 B | 703400d7c82c02a3625d102d5a0a4bd6 |
| genomic_resource.yaml | 4.75 KB | 84c35cf14140dd9d1fcd752ea455e064 |
| genomic_resource_original.yaml | 4.59 KB | de22e74656a3701ab3f62c7b1263cc3d |
| statistics/ |