TF_ChIP-seq_ENCSR815ZDS
TF_ChIP-seq ENCSR815ZDS [biosample_summary="Homo sapiens K562" and target="SREBF1"]
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| Id: | TF_ChIP-seq/ENCSR815ZDS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR815ZDS [biosamplesummary="Homo sapiens K562" and target="SREBF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN480ISB|/analyses/ENCAN480ISB/} has in progress subobject document {eb97d9c9-68e7-4416-8b13-7ec2406a69d0|/documents/eb97d9c9-68e7-4416-8b13-7ec2406a69d0/} audit_internal_action: Released analysis {ENCAN480ISB|/analyses/ENCAN480ISB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF595DTP|/files/ENCFF595DTP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10954053 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SREBF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF625UZL|/files/ENCFF625UZL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 18792742 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SREBF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF029RBI|/files/ENCFF029RBI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.07 and a self consistency ratio of 2.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR815ZDS | float |
TF_ChIP-seq_ENCSR815ZDS |
TF_ChIP-seq ENCSR815ZDS [biosample_summary="Homo sapiens K562" and target="SREBF1"]
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[4.5, 343] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF029RBI.bed.gz | 50.33 KB | b286c5e7861dccda6758756ec4cab94c |
| ENCFF029RBI.bed.gz.dvc | 99.0 B | b019a796df9d74bf4b87c3a1726994b5 |
| ENCFF029RBI.tabix.bed.gz | 36.27 KB | 5edff7ae7f30894218f51508680b81be |
| ENCFF029RBI.tabix.bed.gz.dvc | 105.0 B | 6ff25b4b50bbbdc8362755d2433dbf6e |
| ENCFF029RBI.tabix.bed.gz.tbi | 29.43 KB | b7ba977397ef31c7ac4c2c50d3501f59 |
| ENCFF029RBI.tabix.bed.gz.tbi.dvc | 109.0 B | 5169b335f6889da9f0c4825bf5ec976e |
| genomic_resource.yaml | 3.11 KB | 8a7456323c4ef501f97181121b5d2889 |
| genomic_resource_original.yaml | 3.01 KB | 5361b06cb531dc8e77d0edba385fc5c5 |
| statistics/ |