TF_ChIP-seq_ENCSR814AJH
TF_ChIP-seq ENCSR814AJH [biosample_summary="Homo sapiens K562" and target="SRSF9"]
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| Id: | TF_ChIP-seq/ENCSR814AJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR814AJH [biosamplesummary="Homo sapiens K562" and target="SRSF9"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN983BHA|/analyses/ENCAN983BHA/} has in progress subobject document {93f5d3ca-c334-43a8-bb90-5e1879529b4a|/documents/93f5d3ca-c334-43a8-bb90-5e1879529b4a/} audit_internal_action: Released analysis {ENCAN983BHA|/analyses/ENCAN983BHA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF323SRA|/files/ENCFF323SRA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14021692 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SRSF9-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF289JTM|/files/ENCFF289JTM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12243598 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SRSF9-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF746IEZ|/files/ENCFF746IEZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.00 and a self consistency ratio of 3.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR814AJH | float |
TF_ChIP-seq_ENCSR814AJH |
TF_ChIP-seq ENCSR814AJH [biosample_summary="Homo sapiens K562" and target="SRSF9"]
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[4.15, 26.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF746IEZ.bed.gz | 474.0 B | cb60feabd6135d932a52a23e3f9553fb |
| ENCFF746IEZ.bed.gz.dvc | 97.0 B | bef13e55c4396edba5b0f8f967281a73 |
| ENCFF746IEZ.tabix.bed.gz | 391.0 B | 8ab7a3ac239841727bc54b7b4b72c945 |
| ENCFF746IEZ.tabix.bed.gz.dvc | 103.0 B | 356bb6810944687e270d04031cbd69f4 |
| ENCFF746IEZ.tabix.bed.gz.tbi | 1.42 KB | 9839dbcc387f11aea6c56640a9fa6035 |
| ENCFF746IEZ.tabix.bed.gz.tbi.dvc | 108.0 B | 9f129eaaa8019147a0c4b35997ef763a |
| genomic_resource.yaml | 3.1 KB | 807bcf0fcd94a33bc37d0439f6661583 |
| genomic_resource_original.yaml | 3.01 KB | cd09e5b2e5681c699b85b10330eb5fe6 |
| statistics/ |