TF_ChIP-seq_ENCSR813DCK
TF_ChIP-seq ENCSR813DCK [biosample_summary="Homo sapiens GM12878" and target="SMAD1"]
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| Id: | TF_ChIP-seq/ENCSR813DCK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR813DCK [biosamplesummary="Homo sapiens GM12878" and target="SMAD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN873UAD|/analyses/ENCAN873UAD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN873UAD|/analyses/ENCAN873UAD/} has in progress subobject document {42fa2ed0-6224-47f0-9d45-d4a77150934b|/documents/42fa2ed0-6224-47f0-9d45-d4a77150934b/} audit_warning: Processed alignments file {ENCFF262ESX|/files/ENCFF262ESX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19673096 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMAD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF262ESX|/files/ENCFF262ESX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF262ESX|/files/ENCFF262ESX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955YTJ|/files/ENCFF955YTJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955YTJ|/files/ENCFF955YTJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR813DCK | float |
TF_ChIP-seq_ENCSR813DCK |
TF_ChIP-seq ENCSR813DCK [biosample_summary="Homo sapiens GM12878" and target="SMAD1"]
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[11.2, 1.9e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF033MGN.bed.gz | 175.02 KB | 94ba88d57587d635bcb888912b7d8069 |
| ENCFF033MGN.bed.gz.dvc | 100.0 B | 324f401c0954efac4c243b2abc16c742 |
| ENCFF033MGN.tabix.bed.gz | 126.14 KB | aa6c0191caecb10dd0f98d6832c398c5 |
| ENCFF033MGN.tabix.bed.gz.dvc | 106.0 B | 77caac03644123922ad268ad167cf38f |
| ENCFF033MGN.tabix.bed.gz.tbi | 65.07 KB | b4ffaa36a0a501d1ebb491a11ffd45a8 |
| ENCFF033MGN.tabix.bed.gz.tbi.dvc | 109.0 B | f1dd4874a5fcaeabbab22391c1689471 |
| genomic_resource.yaml | 5.24 KB | 30dd62bf459ace42b15b5fa2a968977a |
| genomic_resource_original.yaml | 5.14 KB | 61b0f239f8d9b083127c9613e602aa93 |
| statistics/ |