TF_ChIP-seq_ENCSR809JSD
TF_ChIP-seq ENCSR809JSD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"]
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| Id: | TF_ChIP-seq/ENCSR809JSD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR809JSD [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN112KBW|/analyses/ENCAN112KBW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF978VND|/files/ENCFF978VND/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF978VND|/files/ENCFF978VND/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF361NKK|/files/ENCFF361NKK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF361NKK|/files/ENCFF361NKK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.65. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF093BBG|/files/ENCFF093BBG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.39 and a self consistency ratio of 3.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR809JSD | float |
TF_ChIP-seq_ENCSR809JSD |
TF_ChIP-seq ENCSR809JSD [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IRF1" and target="IRF1"]
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[8.43, 318] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF093BBG.bed.gz | 38.39 KB | a9c34aa0b304ac147f35135504b75965 |
| ENCFF093BBG.bed.gz.dvc | 99.0 B | 7ac5e296f9ec045875b6cdbb5fb0604d |
| ENCFF093BBG.tabix.bed.gz | 27.58 KB | 7a8505b3e0ffa5778a75a299bead192b |
| ENCFF093BBG.tabix.bed.gz.dvc | 105.0 B | 81008fde01098d0a942bee76d7c375c3 |
| ENCFF093BBG.tabix.bed.gz.tbi | 20.56 KB | 8b05b8eec194750730073379e58a188f |
| ENCFF093BBG.tabix.bed.gz.tbi.dvc | 109.0 B | 170c24953f542ff7ab29bbf2cddc94ff |
| genomic_resource.yaml | 4.74 KB | 6dd72ebb243c693abaf82698a82ecf97 |
| genomic_resource_original.yaml | 4.58 KB | 459a53f5054f4b57ded45be83f54f151 |
| statistics/ |