TF_ChIP-seq_ENCSR807VQT
TF_ChIP-seq ENCSR807VQT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT4" and target="ZMAT4"]
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| Id: | TF_ChIP-seq/ENCSR807VQT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR807VQT [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT4" and target="ZMAT4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN132ZDL|/analyses/ENCAN132ZDL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF812XIA|/files/ENCFF812XIA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF812XIA|/files/ENCFF812XIA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.27. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF243ARF|/files/ENCFF243ARF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF243ARF|/files/ENCFF243ARF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR807VQT | float |
TF_ChIP-seq_ENCSR807VQT |
TF_ChIP-seq ENCSR807VQT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZMAT4" and target="ZMAT4"]
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[14.1, 336] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF092WKT.bed.gz | 39.33 KB | 57c23d0a2492cde31fa9a81f9070f2e9 |
| ENCFF092WKT.bed.gz.dvc | 99.0 B | 5544627a924b7d4f0a654d885cc9e94f |
| ENCFF092WKT.tabix.bed.gz | 25.12 KB | a1b27f7d5579b122dfd616cf4d9980c5 |
| ENCFF092WKT.tabix.bed.gz.dvc | 105.0 B | dc2c000d5189acfabff6cd219a575e42 |
| ENCFF092WKT.tabix.bed.gz.tbi | 21.3 KB | 30db8155bd7d2fdb7209cfa2edad5852 |
| ENCFF092WKT.tabix.bed.gz.tbi.dvc | 109.0 B | 18b75b58d0aa690f06604c127d752cf7 |
| genomic_resource.yaml | 4.23 KB | e1a11280b69b340a17d5a9d815c7cad3 |
| genomic_resource_original.yaml | 4.07 KB | 84190727fdd9c215dbf8dbaabd72251c |
| statistics/ |