TF_ChIP-seq_ENCSR805SIA
TF_ChIP-seq ENCSR805SIA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PURB" and target="PURB"]
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| Id: | TF_ChIP-seq/ENCSR805SIA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR805SIA [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PURB" and target="PURB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PURB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN958GQM|/analyses/ENCAN958GQM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF185HDM|/files/ENCFF185HDM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline has 19761601 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PURB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF185HDM|/files/ENCFF185HDM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF185HDM|/files/ENCFF185HDM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.97. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF259LEH|/files/ENCFF259LEH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF259LEH|/files/ENCFF259LEH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR805SIA | float |
TF_ChIP-seq_ENCSR805SIA |
TF_ChIP-seq ENCSR805SIA [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens PURB" and target="PURB"]
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[8.36, 67.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF500BWO.bed.gz | 6.27 KB | b08bfdf72a39b00c730fb5707cc295cd |
| ENCFF500BWO.bed.gz.dvc | 98.0 B | c0ffb528f26580bb10ac52756c9b98b0 |
| ENCFF500BWO.tabix.bed.gz | 4.96 KB | b063a184891d8ee3afa865b6180bc81d |
| ENCFF500BWO.tabix.bed.gz.dvc | 104.0 B | bee11f43bcf49316301cbeac138e4eb4 |
| ENCFF500BWO.tabix.bed.gz.tbi | 5.66 KB | 0c1423835e2d1dfca0fab706fcc43150 |
| ENCFF500BWO.tabix.bed.gz.tbi.dvc | 108.0 B | 1a0d193751838a6d92c0365b60b8176c |
| genomic_resource.yaml | 4.7 KB | 40ba32a4e5c4ad4edc17135c0273ec3e |
| genomic_resource_original.yaml | 4.54 KB | 6db1781699e5168eee57f6b1143168ac |
| statistics/ |