TF_ChIP-seq_ENCSR804OBA
TF_ChIP-seq ENCSR804OBA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
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| Id: | TF_ChIP-seq/ENCSR804OBA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR804OBA [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JUN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN571SHV|/analyses/ENCAN571SHV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475YWT|/files/ENCFF475YWT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475YWT|/files/ENCFF475YWT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.83. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF281HJL|/files/ENCFF281HJL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF281HJL|/files/ENCFF281HJL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR804OBA | float |
TF_ChIP-seq_ENCSR804OBA |
TF_ChIP-seq ENCSR804OBA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
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[9.43, 573] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF459NUP.bed.gz | 103.48 KB | aa6b66081ca641d71fd81e9bd237ed49 |
| ENCFF459NUP.bed.gz.dvc | 100.0 B | cd9af76e859422927d2e2373e97274dd |
| ENCFF459NUP.tabix.bed.gz | 72.55 KB | b6785928af3904875adb7d6a3a1c3d30 |
| ENCFF459NUP.tabix.bed.gz.dvc | 105.0 B | 207f5f4346cd9019a9af390ffdca583b |
| ENCFF459NUP.tabix.bed.gz.tbi | 48.54 KB | dc2ba75c34edd869fdb61a981184114d |
| ENCFF459NUP.tabix.bed.gz.tbi.dvc | 109.0 B | 291dc989c4e8eeb992e12e27bcc3dde4 |
| genomic_resource.yaml | 4.21 KB | 33777abd71591009e2be14f8c8505512 |
| genomic_resource_original.yaml | 4.06 KB | d18ee18009b4854112cb44eb79a1c334 |
| statistics/ |