TF_ChIP-seq_ENCSR803EKW
TF_ChIP-seq ENCSR803EKW [biosample_summary="Homo sapiens K562" and target="NCOA2"]
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| Id: | TF_ChIP-seq/ENCSR803EKW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR803EKW [biosamplesummary="Homo sapiens K562" and target="NCOA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN607EYF|/analyses/ENCAN607EYF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF314DOH|/files/ENCFF314DOH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF314DOH|/files/ENCFF314DOH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.69. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR803EKW | float |
TF_ChIP-seq_ENCSR803EKW |
TF_ChIP-seq ENCSR803EKW [biosample_summary="Homo sapiens K562" and target="NCOA2"]
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[15.5, 5.77e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF914RFS.bed.gz | 57.82 KB | 289ffb2b564ccc8cc2ef594a4cfcf6d4 |
| ENCFF914RFS.bed.gz.dvc | 99.0 B | 1ae9b3fa8041a027508fb9e485a8c0a6 |
| ENCFF914RFS.tabix.bed.gz | 38.6 KB | 0e834b80bd9bee5a43ae08f0e27af5e3 |
| ENCFF914RFS.tabix.bed.gz.dvc | 105.0 B | b967b68a786e2aa7171e60b4b6d688c6 |
| ENCFF914RFS.tabix.bed.gz.tbi | 31.95 KB | 4888f9155d2d59b877c451c842003f81 |
| ENCFF914RFS.tabix.bed.gz.tbi.dvc | 109.0 B | 380c2b2f3e56145b695d65671a421ea2 |
| genomic_resource.yaml | 3.19 KB | e78037154e4848bc80a24f288b7f870c |
| genomic_resource_original.yaml | 3.09 KB | bdcd5a3178ff064a8eeae53082d45cb4 |
| statistics/ |