| Id: | TF_ChIP-seq/ENCSR801SNX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR801SNX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B" and target="ZNF512B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN992RKP|/analyses/ENCAN992RKP/} has in progress subobject document {2a171e51-6436-4a33-a683-0e7137106b22|/documents/2a171e51-6436-4a33-a683-0e7137106b22/} audit_internal_action: Released analysis {ENCAN992RKP|/analyses/ENCAN992RKP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF559CTB|/files/ENCFF559CTB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF559CTB|/files/ENCFF559CTB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF647EQP|/files/ENCFF647EQP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF647EQP|/files/ENCFF647EQP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.99. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF050KYT|/files/ENCFF050KYT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 4.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF126PJB|/files/ENCFF126PJB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 4.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR801SNX | float |
TF_ChIP-seq_ENCSR801SNX |
TF_ChIP-seq ENCSR801SNX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF512B" and target="ZNF512B"]
|
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[11.7, 218] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF050KYT.bed.gz | 180.35 KB | 73c04d88af7099cc98f5fe1c122b8f5c |
| ENCFF050KYT.bed.gz.dvc | 100.0 B | 8799fcc8a09a8dd87e902d16849ccff3 |
| ENCFF050KYT.tabix.bed.gz | 133.18 KB | dc67f04488243c9d20c45e2d587fef2d |
| ENCFF050KYT.tabix.bed.gz.dvc | 106.0 B | 6b4967f3e0db84825b42f320f4c3c794 |
| ENCFF050KYT.tabix.bed.gz.tbi | 65.81 KB | c243334dabda56b0cf6fd431d9205009 |
| ENCFF050KYT.tabix.bed.gz.tbi.dvc | 109.0 B | 631d6df53f79899c913b9eb285238f0b |
| genomic_resource.yaml | 5.5 KB | cda5c1f01b071a647120255a713d0904 |
| genomic_resource_original.yaml | 5.33 KB | 340fa5cd87982db6426cfeeb83c18a50 |
| statistics/ |