TF_ChIP-seq_ENCSR801RPW
TF_ChIP-seq ENCSR801RPW [biosample_summary="Homo sapiens K562 stably expressing GTF2A2" and target="GTF2A2"]
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| Id: | TF_ChIP-seq/ENCSR801RPW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR801RPW [biosamplesummary="Homo sapiens K562 stably expressing GTF2A2" and target="GTF2A2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged GTF2A2 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN788BXM|/analyses/ENCAN788BXM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF658DNV|/files/ENCFF658DNV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF658DNV|/files/ENCFF658DNV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR801RPW | float |
TF_ChIP-seq_ENCSR801RPW |
TF_ChIP-seq ENCSR801RPW [biosample_summary="Homo sapiens K562 stably expressing GTF2A2" and target="GTF2A2"]
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[18.5, 1.89e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF167HYX.bed.gz | 118.72 KB | 38fe13495b413cb9d70bd0c99f9cfa0d |
| ENCFF167HYX.bed.gz.dvc | 100.0 B | b040f6436beb07eecb86bb01c80f347d |
| ENCFF167HYX.tabix.bed.gz | 89.15 KB | 7c57c1a8a8e99aa7cfc90c5dd413f496 |
| ENCFF167HYX.tabix.bed.gz.dvc | 105.0 B | e264b57ca2ec7a0a827b1ad9bcf7c023 |
| ENCFF167HYX.tabix.bed.gz.tbi | 48.05 KB | 8c902ce33fab74cf38f4d2713fac7999 |
| ENCFF167HYX.tabix.bed.gz.tbi.dvc | 109.0 B | 3f076ccbf02d909dfa3b7cc3a2b0a1a8 |
| genomic_resource.yaml | 2.75 KB | b05ddb81316213503dd16bc2a846f8e0 |
| genomic_resource_original.yaml | 2.63 KB | 226db5bf3617fb26d2a6345812000565 |
| statistics/ |