TF_ChIP-seq_ENCSR800KMQ
TF_ChIP-seq ENCSR800KMQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"]
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| Id: | TF_ChIP-seq/ENCSR800KMQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR800KMQ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN855KBL|/analyses/ENCAN855KBL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF837JNH|/files/ENCFF837JNH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF837JNH|/files/ENCFF837JNH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.75. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF624WBH|/files/ENCFF624WBH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF624WBH|/files/ENCFF624WBH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.04. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR800KMQ | float |
TF_ChIP-seq_ENCSR800KMQ |
TF_ChIP-seq ENCSR800KMQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"]
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[9.65, 773] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF124KCE.bed.gz | 94.64 KB | 3154aa211bac58ce311f643c7aa9023e |
| ENCFF124KCE.bed.gz.dvc | 99.0 B | 75ff109848007e6b5c9d939f9da8bc52 |
| ENCFF124KCE.tabix.bed.gz | 69.72 KB | e6ab59486429bd44e6202bd24aff9a5d |
| ENCFF124KCE.tabix.bed.gz.dvc | 105.0 B | e81afcc4dae31b2e8cea8bc562ea6834 |
| ENCFF124KCE.tabix.bed.gz.tbi | 39.86 KB | a7ee723ddefd30480d4d67294a93f955 |
| ENCFF124KCE.tabix.bed.gz.tbi.dvc | 109.0 B | 7472342310d00b7a3d50d53e873badc2 |
| genomic_resource.yaml | 4.24 KB | 04c6790ec29a0fa7afe55d120f6166a9 |
| genomic_resource_original.yaml | 4.07 KB | 37080e44cc1d08ecf7f4fa95c45a1ad9 |
| statistics/ |