TF_ChIP-seq_ENCSR800ASH
TF_ChIP-seq ENCSR800ASH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234" and target="ZNF234"]
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| Id: | TF_ChIP-seq/ENCSR800ASH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR800ASH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234" and target="ZNF234"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN890NOX|/analyses/ENCAN890NOX/} has in progress subobject document {7b2b78db-5acf-4dfe-9197-96dd9a316bbc|/documents/7b2b78db-5acf-4dfe-9197-96dd9a316bbc/} audit_internal_action: Released analysis {ENCAN890NOX|/analyses/ENCAN890NOX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF208AWJ|/files/ENCFF208AWJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF208AWJ|/files/ENCFF208AWJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR800ASH | float |
TF_ChIP-seq_ENCSR800ASH |
TF_ChIP-seq ENCSR800ASH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF234" and target="ZNF234"]
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[9.21, 409] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF104XLA.bed.gz | 110.42 KB | 5b6c6a68f300c6f8102c9f2725f516b3 |
| ENCFF104XLA.bed.gz.dvc | 100.0 B | 602162cd894fac3432e65d70f4dcea22 |
| ENCFF104XLA.tabix.bed.gz | 83.21 KB | 1dc3c8e984ee6f5268936889afb027ae |
| ENCFF104XLA.tabix.bed.gz.dvc | 105.0 B | e7f28a1b9d1845c9341b39d02e251e17 |
| ENCFF104XLA.tabix.bed.gz.tbi | 44.99 KB | a4000a480de50b5499475e763f71a250 |
| ENCFF104XLA.tabix.bed.gz.tbi.dvc | 109.0 B | 9f2e9fde443beb58c8c0bc56f8d56d44 |
| genomic_resource.yaml | 3.2 KB | 7c67e3398647c3584220a6b55176f272 |
| genomic_resource_original.yaml | 3.03 KB | 5d1337e98dce36cd566da7faf347a512 |
| statistics/ |