TF_ChIP-seq_ENCSR798MFW
TF_ChIP-seq ENCSR798MFW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"]
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| Id: | TF_ChIP-seq/ENCSR798MFW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR798MFW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN283LYU|/analyses/ENCAN283LYU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN283LYU|/analyses/ENCAN283LYU/} has in progress subobject document {82f6386f-206a-438c-9de4-46c9b916afc8|/documents/82f6386f-206a-438c-9de4-46c9b916afc8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF919KUU|/files/ENCFF919KUU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF919KUU|/files/ENCFF919KUU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.70. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF590NAX|/files/ENCFF590NAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF590NAX|/files/ENCFF590NAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR798MFW | float |
TF_ChIP-seq_ENCSR798MFW |
TF_ChIP-seq ENCSR798MFW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR1H2" and target="NR1H2"]
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[10.9, 411] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF798KXN.bed.gz | 88.77 KB | 6d90bf963f0a622f21352975271a8a1f |
| ENCFF798KXN.bed.gz.dvc | 99.0 B | bb9c785e4a08f0305c0dc5a3a36795d1 |
| ENCFF798KXN.tabix.bed.gz | 64.4 KB | 15a5dc8fcad095b37772336d34de77e0 |
| ENCFF798KXN.tabix.bed.gz.dvc | 105.0 B | 22ea17a1044962844759327ee562640c |
| ENCFF798KXN.tabix.bed.gz.tbi | 37.41 KB | 184a3646bc05b296fad373d990c8f71f |
| ENCFF798KXN.tabix.bed.gz.tbi.dvc | 109.0 B | 72173135127f38442ed2aeb517852c0b |
| genomic_resource.yaml | 4.44 KB | 2c0e357bcfac461785660d4861c53794 |
| genomic_resource_original.yaml | 4.28 KB | 76e67b317d8fe16a9c80218bb9f07bbc |
| statistics/ |