TF_ChIP-seq_ENCSR797SWM
TF_ChIP-seq ENCSR797SWM [biosample_summary="Homo sapiens K562" and target="MITF"]
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| Id: | TF_ChIP-seq/ENCSR797SWM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR797SWM [biosamplesummary="Homo sapiens K562" and target="MITF"] |
| Description: |
status: released biological_replicates: Rep 3, Rep 4 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN870QOQ|/analyses/ENCAN870QOQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF670CVM|/files/ENCFF670CVM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19069970 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MITF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365ZKI|/files/ENCFF365ZKI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF365ZKI|/files/ENCFF365ZKI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF670CVM|/files/ENCFF670CVM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF670CVM|/files/ENCFF670CVM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR797SWM | float |
TF_ChIP-seq_ENCSR797SWM |
TF_ChIP-seq ENCSR797SWM [biosample_summary="Homo sapiens K562" and target="MITF"]
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[28.3, 1.6e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF497XOD.bed.gz | 531.11 KB | 0ee41a02ba74c38f647572359038656e |
| ENCFF497XOD.bed.gz.dvc | 100.0 B | 2f2beb5f4de163e18a537059f246a6e8 |
| ENCFF497XOD.tabix.bed.gz | 418.02 KB | 0eb239e3e646558b626d58736ab31d25 |
| ENCFF497XOD.tabix.bed.gz.dvc | 106.0 B | 1c2c18454c88cabbfab40e0c6302d908 |
| ENCFF497XOD.tabix.bed.gz.tbi | 226.34 KB | 2019348120f305ac20ebe689819c13be |
| ENCFF497XOD.tabix.bed.gz.tbi.dvc | 110.0 B | b90146b70b5099dae05006340e4f0106 |
| genomic_resource.yaml | 4.97 KB | 1e234861334be8c55e41e1056da71c9d |
| genomic_resource_original.yaml | 4.88 KB | c2c3d2a09bf07b9b62820604ac17e310 |
| statistics/ |