TF_ChIP-seq_ENCSR796ITY
TF_ChIP-seq ENCSR796ITY [biosample_summary="Homo sapiens K562" and target="NFIC"]
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| Id: | TF_ChIP-seq/ENCSR796ITY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR796ITY [biosamplesummary="Homo sapiens K562" and target="NFIC"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN630WAS|/analyses/ENCAN630WAS/} has in progress subobject document {8773db37-d106-4aed-a92a-aeb533c85079|/documents/8773db37-d106-4aed-a92a-aeb533c85079/} audit_internal_action: Released analysis {ENCAN630WAS|/analyses/ENCAN630WAS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF198XXJ|/files/ENCFF198XXJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF198XXJ|/files/ENCFF198XXJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.05. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF705YAH|/files/ENCFF705YAH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF705YAH|/files/ENCFF705YAH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR796ITY | float |
TF_ChIP-seq_ENCSR796ITY |
TF_ChIP-seq ENCSR796ITY [biosample_summary="Homo sapiens K562" and target="NFIC"]
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[18.8, 3.12e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF169MAE.bed.gz | 926.73 KB | 96cb97bd6a7e828296a41aac4af36040 |
| ENCFF169MAE.bed.gz.dvc | 100.0 B | 17344e51a7eff5799421da85258fb2d8 |
| ENCFF169MAE.tabix.bed.gz | 635.14 KB | 71a400fe7920f018578f2a3152ac73b6 |
| ENCFF169MAE.tabix.bed.gz.dvc | 106.0 B | 1847273a70e23b74d859b69e81f4b84b |
| ENCFF169MAE.tabix.bed.gz.tbi | 275.95 KB | 64560f2e048d829ca43bb866734d8d5f |
| ENCFF169MAE.tabix.bed.gz.tbi.dvc | 110.0 B | 48c47b3cd2be2efb1f2ec466862bafed |
| genomic_resource.yaml | 4.49 KB | d76f588dd574901b1559f0d857113b7b |
| genomic_resource_original.yaml | 4.4 KB | f9befaa6e44ac806368e87f4a5bfab70 |
| statistics/ |