TF_ChIP-seq_ENCSR795IYP
TF_ChIP-seq ENCSR795IYP [biosample_summary="Homo sapiens K562" and target="JUNB"]
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| Id: | TF_ChIP-seq/ENCSR795IYP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR795IYP [biosamplesummary="Homo sapiens K562" and target="JUNB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF739XTO|/files/ENCFF739XTO/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN664WAO|/analyses/ENCAN664WAO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF090SFR|/files/ENCFF090SFR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16300996 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUNB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF529CTW|/files/ENCFF529CTW/}, {ENCFF739XTO|/files/ENCFF739XTO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.59 and a self consistency ratio of 2.66. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF521NPG|/files/ENCFF521NPG/}, {ENCFF123BAT|/files/ENCFF123BAT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.59 and a self consistency ratio of 2.66. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR795IYP | float |
TF_ChIP-seq_ENCSR795IYP |
TF_ChIP-seq ENCSR795IYP [biosample_summary="Homo sapiens K562" and target="JUNB"]
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[5.01, 587] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF739XTO.bed.gz | 90.11 KB | 6a857de42db30576df96a5224a3d56b8 |
| ENCFF739XTO.bed.gz.dvc | 99.0 B | 4fd532407ea0d70af895e37c90d00751 |
| ENCFF739XTO.tabix.bed.gz | 65.76 KB | 5617c0bd189b830cf5af774d31278979 |
| ENCFF739XTO.tabix.bed.gz.dvc | 105.0 B | 1a7bb07891e74ff2f34d35cca6b6f304 |
| ENCFF739XTO.tabix.bed.gz.tbi | 47.65 KB | 5d02fecebd4e2c2e4a92b28afd3c262a |
| ENCFF739XTO.tabix.bed.gz.tbi.dvc | 109.0 B | 0c98f611c761bc03165049ece78d4d14 |
| genomic_resource.yaml | 3.15 KB | e019bb75f416a0b50772f4c38e457c83 |
| genomic_resource_original.yaml | 3.06 KB | b01d938276438810ce1210992f6ead69 |
| statistics/ |