| Id: | TF_ChIP-seq/ENCSR795CKZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR795CKZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN30" and target="ZSCAN30"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN30 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN539DFR|/analyses/ENCAN539DFR/} has in progress subobject document {eeffd37b-0f41-44a1-b9e8-cd00b785faf0|/documents/eeffd37b-0f41-44a1-b9e8-cd00b785faf0/} audit_internal_action: Released analysis {ENCAN539DFR|/analyses/ENCAN539DFR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF180GBP|/files/ENCFF180GBP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF180GBP|/files/ENCFF180GBP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.38. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF176BFA|/files/ENCFF176BFA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF176BFA|/files/ENCFF176BFA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.70. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR795CKZ | float |
TF_ChIP-seq_ENCSR795CKZ |
TF_ChIP-seq ENCSR795CKZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN30" and target="ZSCAN30"]
|
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[11.5, 454] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF560NWT.bed.gz | 116.77 KB | c171236efd2a5927e271cf40a4771633 |
| ENCFF560NWT.bed.gz.dvc | 100.0 B | 0ab42806f593435498cf3a6fad0f860e |
| ENCFF560NWT.tabix.bed.gz | 90.15 KB | 5e611da26ecb59b65f3694beb26e9af5 |
| ENCFF560NWT.tabix.bed.gz.dvc | 105.0 B | 3f4b7520e7a168ae34bd4fd2f936fcbe |
| ENCFF560NWT.tabix.bed.gz.tbi | 45.38 KB | 4a304a1bf8f2284c8bf7b59cf3590af4 |
| ENCFF560NWT.tabix.bed.gz.tbi.dvc | 109.0 B | 4795aa1c7b9741d3b3d9c9a631154427 |
| genomic_resource.yaml | 4.46 KB | 7928aa0d52ea397e0de8feeb05ecf38b |
| genomic_resource_original.yaml | 4.29 KB | f8fbdf50e815eb7a67521d6898a03910 |
| statistics/ |