TF_ChIP-seq_ENCSR794LVK
TF_ChIP-seq ENCSR794LVK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARNTL" and target="ARNTL"]
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| Id: | TF_ChIP-seq/ENCSR794LVK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR794LVK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARNTL" and target="ARNTL"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARNTL output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN077WOE|/analyses/ENCAN077WOE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN077WOE|/analyses/ENCAN077WOE/} has in progress subobject document {011435bd-4b15-4057-a2a9-3b834e183873|/documents/011435bd-4b15-4057-a2a9-3b834e183873/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF383PKD|/files/ENCFF383PKD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF383PKD|/files/ENCFF383PKD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.39. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF657TFD|/files/ENCFF657TFD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF657TFD|/files/ENCFF657TFD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR794LVK | float |
TF_ChIP-seq_ENCSR794LVK |
TF_ChIP-seq ENCSR794LVK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARNTL" and target="ARNTL"]
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[8.9, 683] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF588WBI.bed.gz | 350.3 KB | 48aed658ee967fa3639f49ca1ed0a49d |
| ENCFF588WBI.bed.gz.dvc | 100.0 B | 9cb47f9d1a91d6cb72f4cebe91afb3c2 |
| ENCFF588WBI.tabix.bed.gz | 284.6 KB | 14d262eac80a7ac332e23032d6f57258 |
| ENCFF588WBI.tabix.bed.gz.dvc | 106.0 B | c33e319f6d27e8fe545d0b70d21694f0 |
| ENCFF588WBI.tabix.bed.gz.tbi | 111.34 KB | d175db7e53f066f4a9b9d20660d8a8a5 |
| ENCFF588WBI.tabix.bed.gz.tbi.dvc | 110.0 B | 16222047711198f2ff9adb656cbe2ce2 |
| genomic_resource.yaml | 4.44 KB | a5b8e2a8aee305078ed52b215818c7ae |
| genomic_resource_original.yaml | 4.28 KB | c4bb11a5f37feda1d24c13badbec10ed |
| statistics/ |